Nanopore sequencing of P. falciparum - SRA

SRX26770673: Nanopore sequencing of P. falciparum
1 OXFORD_NANOPORE (MinION) run: 60,172 spots, 33.5M bases, 26.1Mb downloads

Design: Microhaplotype panel sequenced on R10.4.1. Flow Cell (FLO-MIN114), basecalled with dorado v8.0.2 SUP model.

Submitted by: Swiss Tropical and Public Health Institute

Study: Multiplexed nanopore amplicon sequencing to distinguish P. falciparum recrudescence from new infection in antimalarial drug trials

PRJNA1188139 • SRP546231 • All experiments • All runs

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Multiplexed amplicon sequencing (AmpSeq) of a panel targeting six highly diverse P. falciparum microhaplotypes using the MinION (Oxford Nanopore Technology). The goal was to assess the sensitivity, specificity, robustness and genetic marker diversity of the nanopore AmpSeq assay for genotyping P. falciparum to distinguish recrudescence from new infection in clinical trials.

Sample:

SAMN44825788 • SRS23257891 • All experiments • All runs

Organism: Plasmodium falciparum 3D7

Library:

Name: PCR_correction_mock_001

Instrument: MinION

Strategy: AMPLICON

Source: GENOMIC

Selection: PCR

Layout: SINGLE

Runs: 1 run, 60,172 spots, 33.5M bases, 26.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR31401586	60,172	33.5M	26.1Mb	2024-11-19

ID:: 36176599

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